Description

Remove lines from bed file that refer to off-chromosome locations.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

bedgraph{:bash}

:file

bedGraph file

*.{bedgraph}

sizes{:bash}

:file

Chromosome sizes file

Output

name:type
description
pattern

bedgraph{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.bedGraph{:bash}

:file

bedGraph file

*.{bedgraph}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

ucsc
varies; see http://genome.ucsc.edu/license

Remove lines from bed file that refer to off-chromosome locations.