Download sequencing data from the NCBI Sequence Read Archive (SRA).
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
id{:bash}
:string
A string denoting an SRA id.
ncbi_settings{:bash}
:file
An NCBI user settings file.
*.mkfg
certificate{:bash}
Path to a JWT cart file used to access protected dbGAP data on SRA using the sra-toolkit
*.cart
sra{:bash}
:directory
Directory containing SRA data files
*/*.sra
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
SRA Toolkit and SDK from NCBI
