Calculate TIN (transcript integrity number) from RNA-seq reads
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
Input BAM file
*.{bam}
bai{:bash}
Index for input BAM file
*.{bai}
bed{:bash}
BED file containing the reference gene model
*.{bed}
txt{:bash}
TXT file containing tin.py results summary
*.txt
*.txt{:bash}
xls{:bash}
*.xls{:bash}
XLS file containing tin.py results
*.xls
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
