Perform HLA-I typing of sequencing data
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
BAM file
*.{bam}
bai{:bash}
BAM index file
*.{bai}
hla_type{:bash}
Groovy Map containing sample information e.g. [ id:‘test’, seq_type:‘DNA’ ]
${prefix}/*.tsv{:bash}
HLA type
${prefix}/*.tsv
coverage_plot{:bash}
${prefix}/*.pdf{:bash}
OptiType coverage plot
${prefix}/*.pdf
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Precision HLA typing from next-generation sequencing data
