Description

Draw previously-determined 2D layouts of the graph with diverse annotations.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

graph{:bash}

:file

Pangenome graph in GFA v1.0 format or ODGI binary format

*.{gfa,og}

lay{:bash}

:file

2D layout from ‘odgi layout’ in LAY binary format

*.{lay}

Output

name:type
description
pattern

png{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.png{:bash}

:file

File in PNG format containing a 2D drawing of a pangenome graph

*.{png}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml