Description

Construct a dynamic succinct variation graph in ODGI format from a GFAv1.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

graph{:bash}

:file

Pangenome graph in GFA v1.0 format

*.{gfa}

Output

name:type
description
pattern

og{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.og{:bash}

:file

File containing a pangenome graph in ODGI binary format. Usually ends with ‘.og’

*.{og}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml