DNA contaminant removal using NanoLyse
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fastq{:bash}
:file
Basecalled reads in FASTQ.GZ format
*.fastq.gz
fasta{:bash}
A reference fasta file against which to filter.
*.fasta
*.fastq.gz{:bash}
Reads with contaminants removed in FASTQ format
log{:bash}
*.log{:bash}
Log of the Nanolyse run.
*.log
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
