mirtop gff generates the GFF3 adapter format to capture miRNA variations
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
bam{:bash}
:file
Sorted BAM/CRAM/SAM file
*.{bam,cram,sam}
meta2{:bash}
hairpin{:bash}
Hairpin file
*.{fa,fasta}
meta3{:bash}
gtf{:bash}
GTF file
*.{gtf}
species{:bash}
:string
Species name of the GTF file
gff{:bash}
mirtop/*mirtop.gff{:bash}
GFF file
*.{gff}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Small RNA-seq annotation
