Makes a dotplot (Oxford Grid) of pair-wise sequence alignments
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
maf{:bash}
:file
Multiple Alignment Format (MAF) file, compressed with gzip
*.{maf.gz}
annot_b{:bash}
Annotation file in BED, Repeamasker, genePred or AGP format for the second (vertical) sequence
*.{bed,bed.gz,out,out.gz,rmsk.txt,rmsk.txt.gz,genePred,genePred.gz,gff,gff.gz,gtf,gtf.gz,gap.txt,gap.txt.gz}
meta2{:bash}
Groovy Map containing sample information e.g. [ id:'sample2', single_end:false ]
[ id:'sample2', single_end:false ]
annot_a{:bash}
Annotation file in BED, Repeamasker, genePred or AGP format for the first (horizontal) sequence
format{:bash}
:string
Output format (PNG or GIF).
filter{:bash}
:boolean
Remove isolated alignments using the maf-linked software.
maf-linked
gif{:bash}
*.gif{:bash}
Pairwise alignment dot plot image, in GIF format.
*.gif
png{:bash}
*.png{:bash}
Pairwise alignment dot plot image, in PNG format.
*.png
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
LAST finds & aligns related regions of sequences.
