create an hmm profile from a multiple sequence alignment
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
alignment{:bash}
:file
multiple sequence alignment in fasta, clustal, stockholm or phylip format
*
mxfile{:bash}
read substitution score matrix, for use when building profiles from single sequences (—singlemx option)
hmm{:bash}
Gzipped HMM file
*.{hmm.gz}
*.hmm.gz{:bash}
hmmbuildout{:bash}
*.hmmbuild.txt{:bash}
HMM build output
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Biosequence analysis using profile hidden Markov models
