hmmalign from the HMMER suite aligns a number of sequences to an HMM profile
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
fasta{:bash}
:file
Amino acid or nucleotide gzipped compressed fasta file
*.{fna.gz,faa.gz,fasta.gz,fa.gz}
hmm{:bash}
A gzipped HMM file
*.hmm.gz
sto{:bash}
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
*.sto.gz{:bash}
Multiple alignment in gzipped Stockholm format
*.sto.gz
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Biosequence analysis using profile hidden Markov models
