Description

Grafts query sequences from phylogenetic placement on the reference tree

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

jplace{:bash}

:file

jplace file output from phylogenetic placement, e.g. EPA-NG, gzipped or not

*.{jplace,jplace.gz}

Output

name:type
description
pattern

newick{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

*.newick{:bash}

:file

phylogenetic tree file in newick format

*.newick

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml