downloads new versions of the curated SARS-CoV-2 lineage file and barcodes
db_name{:bash}
:string
The name of the database directory
barcodes{:bash}
${db_name}/usher_barcodes.feather{:bash}
:file
File containing lineage defining barcodes
*barcodes.feather
lineages_topology{:bash}
${db_name}/lineages.yml{:bash}
File containing the lineage topology
*lineages.yml
lineages_meta{:bash}
${db_name}/curated_lineages.json{:bash}
File containing lineage metadata that correspond to barcodes
*lineages.json
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Freyja recovers relative lineage abundances from mixed SARS-CoV-2 samples and provides functionality to analyze lineage dynamics.
