Download FASTQ files from SRA or ENA repositories.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
accession{:bash}
:string
ENA/SRA accession to query
fastq{:bash}
*.fastq.gz{:bash}
:file
FASTQ files downloaded from ENA or SRA
*.fastq.gz
runinfo{:bash}
*-run-info.tsv{:bash}
Tab-delimited file containing metadata for each Run downloaded
*-run-info.tsv
runmergers{:bash}
*-run-mergers.tsv{:bash}
Tab-delimited file merge information from —group-by-experiment or —group-by-sample
*-run-mergers.tsv
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
A tool to download FASTQs associated with Study, Experiment, or Run accessions.
