Description

Doublet detection in single-cell RNA-seq data

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

h5ad{:bash}

:file

H5AD anndata object

*.h5ad

Output

name:type
description
pattern

h5ad{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.h5ad{:bash}

:file

H5AD anndata object

*.h5ad

predictions{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.pkl{:bash}

:file

pandas dataframe containing the doublet classification

*.pkl

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

doubletdetection
MIT

Doublet detection in single-cell RNA-seq data