Builds a DIAMOND database
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
Input fasta file
*.{fa,fasta,fa.gz,fasta.gz}
taxonmap{:bash}
Optional mapping file of NCBI protein accession numbers to taxon ids (gzip compressed), required for taxonomy functionality.
*.gz
taxonnodes{:bash}
Optional NCBI taxonomy nodes.dmp file, required for taxonomy functionality.
*.dmp
taxonnames{:bash}
Optional NCBI taxonomy names.dmp file, required for taxonomy functionality.
db{:bash}
*.dmnd{:bash}
File of the indexed DIAMOND database
*.dmnd
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Accelerated BLAST compatible local sequence aligner
