Perform adapter/quality trimming on sequencing reads
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
*.trim.fastq.gz{:bash}
The trimmed/modified fastq reads
*fastq.gz
log{:bash}
*.log{:bash}
cuatadapt log file
*cutadapt.log
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
