Generate the input coverage table for CONCOCT using a BEDFile
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed{:bash}
:file
BED file describing where each contig was cut up (typically output from CONCOCT’s cut_up_fasta.py)
*.bed
bamfiles{:bash}
A single or list of BAM files of reads mapped back to original contigs (prior cutting up)
*.bam
baifiles{:bash}
A single or list of BAM index files (.bai) corresponding to BAM
tsv{:bash}
*.tsv{:bash}
Contig coverage table
*.tsv
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Clustering cONtigs with COverage and ComposiTion
