Description

A module for concatenation of gzipped or uncompressed files

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

files_in{:bash}

:file

List of compressed / uncompressed files

*

Output

name:type
description
pattern

file_out{:bash}

meta{:bash}

:map

Groovy Map containing sample information

${prefix}{:bash}

:file

Concatenated file. Will be gzipped if file_out ends with “.gz”

${file_out}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

cat
GPL-3.0-or-later

Just concatenation