Performs alignment of BS-Seq reads using bwameth
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
meta2{:bash}
fasta{:bash}
Input genome fasta file
meta3{:bash}
index{:bash}
:directory
Directory containing bwameth genome index
bam{:bash}
*.bam{:bash}
Output BAM file containing read alignments
*.{bam}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome.
