Description

Create BWA-mem2 index for reference genome

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fasta{:bash}

:file

Input genome fasta file

Output

name:type
description
pattern

index{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

bwamem2{:bash}

:file

BWA genome index files

*.{0123,amb,ann,bwt.2bit.64,pac}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

bwamem2
MIT

BWA-mem2 is a software package for mapping DNA sequences against a large reference genome, such as the human genome.