Description

Create bowtie index for reference genome

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing information about the genome fasta e.g. [ id:‘test’ ]

fasta{:bash}

:file

Input genome fasta file

Output

name:type
description
pattern

index{:bash}

meta{:bash}

:map

Groovy Map containing information about the genome fasta e.g. [ id:‘test’ ]

bowtie{:bash}

:file

Folder containing bowtie genome index files

*.ebwt

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

bowtie
Artistic-2.0

bowtie is a software package for mapping DNA sequences against a large reference genome, such as the human genome.