Description

Extract OME xml data from OME-tif

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

image{:bash}

:file

Path to image file containing OME metadata

Output

name:type
description
pattern

xml{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

*.xml{:bash}

:file

XML with OME tag metadata

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools