Filters VCF files
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf{:bash}
:file
VCF input file
*.{vcf,bcf,vcf.gz,bcf.gz}
tbi{:bash}
VCF index file
*.tbi
*.${extension}{:bash}
VCF filtered output file
*.tbi{:bash}
Alternative VCF file index
csi{:bash}
*.csi{:bash}
Default VCF file index
*.csi
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Apply fixed-threshold filters to VCF files.
