A bacteriophage lifestyle prediction tool
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
FASTA file containing phage contigs/scaffolds/chromosomes (if it is a multi-FASTA file be sure to add the --multi_fasta argument)
--multi_fasta
*.{fasta,fna,fa}
bacphlip_results{:bash}
*.bacphlip{:bash}
TSV file containing Temperate and Virulent scores for each phage sequence
*.bacphlip
hmmsearch_results{:bash}
*.hmmsearch.tsv{:bash}
TSV file containing binary output indicating gene presence/absence based on hmmsearch results
*.hmmsearch.tsv
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
A Random Forest classifier to predict bacteriophage lifestyle
