Description

Assembly summary statistics in JSON format

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

assembly{:bash}

:file

FASTA file for a given assembly

*.fasta

Output

name:type
description
pattern

json{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.json{:bash}

:file

Assembly statistics in JSON format

*.json

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

assemblyscan
MIT

Assembly summary statistics in JSON format