Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
BAM/CRAM/SAM file
*.{bam,cram,sam}
bai{:bash}
BAM index file
*.bai
fusions{:bash}
Arriba fusions file
*.tsv
meta2{:bash}
gtf{:bash}
Annotation GTF file
*.gtf
meta3{:bash}
protein_domains{:bash}
Protein domain annotation files
*.gff3
meta4{:bash}
cytobands{:bash}
Coordinates of the Giemsa staining bands needed to draw ideograms
.tsv
pdf{:bash}
*.pdf{:bash}
File contains fusions visualisation
*.pdf
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Fast and accurate gene fusion detection from RNA-Seq data
